Graphic Apps    CAD     Ridom TraceEdit

Ridom TraceEdit 1.1.0


Description of

Ridom TraceEdit


Edit DNA trace with this tool. Ridom TraceEdit is a cross-platform graphical DNA trace viewer and editor. TraceEdit displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format. Incorrect base calls can be edited and saved. TraceEdit is freely available and designed to operate on Windows, MacOS X and UNIX platforms.DNA sequencing has been the standard against which other types of DNA testing is compared. Major advances in DNA sequencing include the development of automated sequencers, discovery of fluorescent terminator chemistry, and cycle sequencing. These developments have made sequencing easier to perform and therefore more widely used. Currently, sequencing is used to identify microbial drug resistance mutations, cancer predisposition, somatic mutations, and genetic diseases. With the sequencing of the human genome and the "new era of molecular medicine", one can only expect the use of DNA sequencing to increase. Therefore, an increasing number of people need to check the evidence for individual DNA sequences by inspecting the chromatograms (more commonly known as trace files) from which the base calls were deduced. Trace files are stored in proprietary formats, such as those of ABI, or public formats such as SCF.Ridom TraceEdit can read ABI and SCF trace files and displays their contents. The software can be used to locate and delete the extent of low quality data at both ends of the sequence (trimming by Ns or low base quality values if available). It also enables the user to edit the base calls and to save them in SCF file format. A typical display from TraceEdit includes the name and additional information of the sequence being inspected, the menu bar, the file list pane with tool bar, and the trace editor pane with tool bar. In the file list pane a trace file can be chosen to be displayed in the editor pane. The trace editor pane shows the trace data, the quality values (if available), the original sequence, the edited sequence, and the base positions. The extent of poor quality data at the left of the reading is denoted by gray shading. A separate text window (not shown) is used to display the textual data contained in the file.Ridom TraceEdit Features:1. Operate on Windows, Mac OS X, and Linux operating systems2. View ABI and SCF chromatogram files3. Open at once several chromatogram files or whole directories4. Sort file list by different predefined options5. Navigate file list by keyboard shortcuts6. Scale the trace peak size vertically and horizontally7. Scroll a trace to a desired position8. Select bases from the trace9. Search for sequences using regular expressions10. Display or hide original base calls11. Display or hide quality values, if included in the chromatogram file12. Display as text other chromatogram information contained in the file13. Display as text the DNA sequence of your chromatogram14. Display the reverse complement of a trace15. Mark or unmark bases of interest (low quality, ambiguities)16. Import sequences from NCBI nucleotide database by accession numbers17. Print a trace18. Produce a PDF of a trace19. Copy, paste, and edit sequences20. Use contextual menus to copy, paste, and edit21. Trim sequence ends by Ns or low base quality values22. Save traces in SCF format23. Export base calls as a FASTA sequence24. Initiate a BLAST search from edited sequence25. Communicate directly from within the program with the developers for bug reports and feature requests26. Update the program automatically online


Published by: ridom.de
Downloads: 491
File Size: 5.8 MB
License: Freeware
Product Homepage: Visit ridom.de
Release Date: 31 December, 2012
OS: Windows
Download Location: Primary Download Link Broken? Report it!


Ridom TraceEdit 1.1.0 Download Tags:
RIDOM    StaphType    TraceEdit    TraceEditPro    QAlign    16S rDNA    SpaServer    Concise Guide to Mycobacteria    spa    protein A    MRSA    MLST    Assembler    assembling    DNA sequence    Editor    Software    Staphylococcus aureus    Typing    bacteria    mycobacteria    mycobacterium

Files32.com collects software information directly from original developers using software submission form. Sometimes it can happen that software data are not complete or are outdated. You should confirm all information before relying on it. Using crack, serial number, registration code, keygen and other warez or nulled soft is illegal (even downloading from torrent network) and could be considered as theft in your area. Files32 does not provide download link from Rapidshare, Yousendit, Mediafire, Filefactory and other Free file hosting service also. The software has been submitted by its publisher directly, not obtained from any Peer to Peer file sharing applications such as Shareaza, Limewire, Kazaa, Imesh, BearShare, Overnet, Morpheus, eDonkey, eMule, Ares, BitTorrent Azureus etc..
More Software from www.ridom.de

Ridom EpiCompare 1.0
Free Statistics Tool for Typing Data. Epidemiological typing has many different applications. Those include surveillance of infectious diseases, outbreak control and others. Often two ore more...

License:  Freeware
Platform:  Windows
File Size: 2.2 MB

 

Ridom TraceEdit Related Software

Ridom EpiCompare 1.0
Free Statistics Tool for Typing Data. Epidemiological typing has many different applications. Those include surveillance of infectious diseases, outbreak control and others. Often two ore more...

License:  Freeware
Platform:  Windows
File Size: 2.2 MB

 

SIMSOFT Hotelpro 2006
SIMSOFT Hotelpro offers a complete, low price hotel program and management system, suitable for jasmine (hotel melati) and up to three stars hotels (hotel bintang 3).

License:  Shareware
Platform:  Windows
File Size: 21.6 MB

 

Boost Windows 2.1
Boost Windows 2009 is a revolutionary system booster. Unlike other similar software, they may require you know much knowledge of computer like registry editor, system configuration, and you may...

License:  Shareware
Platform:  Windows
File Size: 1.5 MB

 

Water Test (Langelier) 1.1.8
This program uses the Langelier saturation index to balance the water. An index of between -0.3 and 0.3 is correct. Otherwise your water can be corrosive or tend to scaling. This is a very accurate...

License:  Freeware
Platform:  Windows
File Size: 4.6 MB

 

Crossword Construction Kit by Insight Software Solutions

Crossword Construction Kit 4.0b
Crossword Construction Kit is a great tool for educators, students, publishers, corporate trainers and puzzle enthusiasts to quickly produce professional looking puzzles. Just enter the words and...

License:  Shareware
Platform:  Windows
File Size: 4.7 MB
Cost: $24.95

 

Word Search Construction Kit by Insight Software Solutions

Word Search Construction Kit 4.0b
Word Search Construction Kit is a great tool for educators, students, publishers, corporate trainers and puzzle enthusiasts to quickly produce professional looking puzzles. Just enter the words,...

License:  Shareware
Platform:  Windows
File Size: 4.6 MB
Cost: $24.95

 

Convert AutoCAD DWG to PDF 1.6
Convert AutoCAD DWG to PDF can convert AutoCAD DWG, DXF and DWF files into verctor PDF files directly without need of AutoCAD.

License:  Shareware
Platform: 
File Size: 2.6 MB

 

Dr. Shakes 2.0
An animated display of a vibrating structure along with its associated modes and phases. Dr. Shakes is a simple software designed to help illustrate many of the basic concepts underlying modal...

License:  Freeware
Platform: 
File Size: 280.0 KB

 
 
Top Software

FTP Rush 2.1.8
FTP Rush is a free comprehensive FTP client for smooth file transfer. The program offers fully-fledged functionality delivered in a user-friendly interface and allows experienced users to create...

Crypt4Free by

Crypt4Free 5.47
Crypt4Free is files encryption software with ability to encrypt files and text messages. Support for ZIP files and ability to secure delete sensitive files. Skinnable user friendly interface.

Luxand Blink! by

Luxand Blink! 2.0
Login to your PC without touching a thing! Luxand Blink! is a free tool to let you log in to your Windows account by simply looking into a webcam - no passwords to type and no fingers to scan.

InTask Personal by

InTask Personal 1.5
InTask designed to help team leaders, developers and QA persons to share their efforts and deliver the products on time. The product includes fast task management, interactive gantt, document...

Pop-up Free by

Pop-up Free 1.56
Get rid of annoying popup windows and enhance your Web surf experience. Kill unexpected popup windows and protect your privacy. No more annoying advertisement windows and save your time.

Glary Utilities Portable by

Glary Utilities Portable 2.56.0.8322
One Click A Day For PC Maintenance, Keeps Any PC Problems Away. With 7 million worldwide users, the first-rank & free Glary Utilities is an INDISPENSABLE friend for your PC, with its 100% safe,...

VPSpro by

VPSpro 3.695
VPSpro is the ultimate in the creation of financial projection and general business plans. The unique walk-through process is simple to use and makes easy work of the hard parts of business planning.

Rylstim Budget Lite by

Rylstim Budget Lite 4.5.1.6376
Plan and manage your finances with a simple friendly calendar. Perfect solution for home users and freelancers!

Neox Screen by

Neox Screen 1.0.0.277
Neox Screen is a free application which with the help of the hotkeys you can take screenshots that are crystal sharp, small in size and ready to be shared.

EMCO Remote Installer Free by

EMCO Remote Installer Free 4.1.1
This free remote software deployment tool is designed to install and uninstall Windows software on remote PCs through local networks. You can use it to install and uninstall EXE setups and MSI...

Latest Software

TunesKit Audiobook Converter for Windows 3.0.7
TunesKit Audiobook Converter for Windows is a smart DRM audiobook removal software developed to convert DRM-ed iTunes M4A, M4B and Audible AA, AAX audiobooks to DRM-free MP3, AAC, M4A, M4B, WAV,...

Med-Registratura.NET by

Med-Registratura.NET 3.63
Med-Registratura.NET

Webcam Simulator XP Edition by

Webcam Simulator XP Edition 6.812
Simulates webcam on your system by broadcasting video files as webcam. It adds a virtual camera to your system without having an actual webcam. It can be used with all instant messenger like MSN,...

SPRuler by

SPRuler 2.6.0.2017.0
The screen ruler by means of which it is possible quickly and with ease to measure in pixels any objects on the screen of the monitor (desktop).

ByteScout PDF Extractor SDK 8.7.0.2980
PDF Extractor SDK allows developers to convert PDF to text, PDF to XML, extract images from PDF, convert PDF tables into CSV for Excel, extract information about PDF file in .NET or ActiveX...

Plagiarism Checker X by

Plagiarism Checker X 6.0.5
Plagiarism Checker X finds the free Plagiarism within your content. Whether you are a student, a teacher, a blogger, or a website owner; Plagiarism Checker X can help you deal with all duplication...

Mini Golf Simulator by

Mini Golf Simulator 1.0
What can be more exciting than spending a sunny day in a mini-golf park? Fascinating levels with complex ascents and descents, steep turns and various obstacles are waiting for you there. Try to...

ACDSee Pro by

ACDSee Pro 2018.1.861
ACDSee Photo Studio Professional 2018 - As an established RAW editor and digital asset management solution, ACDSee Photo Studio Professional 2018 is brimming with everything you need to hold...

Aquarium Lab by

Aquarium Lab 2017.7
Properly monitoring and maintain aquarium conditions can lead to a truly beautiful and healthy aquarium. Aquarium Lab makes it easy to track and graph water quality conditions for 21 different...

ScanTransfer by

ScanTransfer 1.0
ScanTransfer is a free Windows desktop software program which enables you to transfer photos and videos from your smart phone to your computer or laptop. ScanTransfer doesn't require you to install...

BestCrypt Volume Encryption 3.77.05
BestCrypt Volume for Disk Encryption protects all data on fixed and removable disks, while also working on RAID, UEFI and GPT partitions. Jetico's encryption software provides protection from...

VShell Server for UNIX 4.3.2
VShell SSH server is a secure alternative to Telnet and FTP on Windows, Mac, and UNIX providing strong encryption, robust authentication and data integrity. Fine-tune your environment with...

Related Searches

Currently Searching

Currently Downloading

Easy Audio/Data CD/DVD Burner by

Easy Audio/Data CD/DVD Burner 1.3.7.7
Want to burn your WAV, MP3, OGG or WMA files to audio CD and play with your CD Player?Or backup your PC to a CD or a 8.4G DVD?

Data Export - Text2DB2 by

Data Export - Text2DB2 1.0
Hxtt Data Export - Text2DB2 is a program to import TXT(CSV, TSV, PSV) into DB2(8 or upper) database. It can export data in DB2 Procedure, or embed in your application,or accord a config file. The...

Splendid City Sports Scheduler, Lite Edition by

Splendid City Sports Scheduler, Lite Edition 5.5.1
Splendid City Team Sports Scheduler and Sports Scheduling Software System is useful for people who organize team sport events. Use it to manage/publish sports schedules of any size and complexity.

RightMark Audio Analyzer 6.2.5
RightMark Audio Analyzer suite is designed for testing quality of analog and digital paths of any audio devices, be it a sound card, an MP3 player, a consumer CD/DVD player or an acoustic set.

Unofficial Quake2 Screen Saver v0.09.0045 beta 1
Unofficial Quake2 Screen Saver displays several animated scenes from Quake 2. The screen saver includes options that let you adjust the sound, and the time between scene changes.

Crystal Internet Meter by

Crystal Internet Meter 2.0 beta 6
Crystal Internet Meter helps you to maximize your bandwidth potential by letting you see just how much of it is actually utilized at any given time. It can display bandwidth data in a customizable...

MoveIt2 Lite 6.12
MoveIt2 is a utility to automatically move / copy / delete files that are added to a specific folder. You can set filters based on the file name, rename files (using regular expressions) when...

NaviCoder (Java IDE editor for Windows) - Freeware also available 2.0
NaviCoder is a Java IDE that runs on Windows which enables programmers to create, navigate, modify, and debug code faster and more accurately. NaviCoder can be used in conjunction with different...

XoftSpySE - (two computers) by

XoftSpySE - (two computers) 4.26
Anti-spyware XoftSpySE is designed to scan the user's complete computer system to detect spyware parasites and quarantine the infected files for immediate protection.

BPACLer by

BPACLer 1.0.0.4
BPACLer is a utility the displays a file or folder?s effective access control list (ACL) (user and group permissions) and owner information. BPACLer eliminates the tedious process of selecting a...

Big Sister (Development Version) for Windows NT v0.94
Big Sister (Development Version) for Windows NT is an SNMP-aware (Simple Network Management Protocol) monitoring program consisting of a Web-based server and a monitoring agent. Big Sister is a...

MadZ DVD to iPod / PSP Video Converter by

MadZ DVD to iPod / PSP Video Converter 2.5.1
Just press one button and MadZ's DVD to IPOD / PSP VIDEO CONVERTER will automatically convert your DVD into the appropriate format for uploading and viewing on your Apple iPod Video Classic, iPod...