Business    Calculators & Converters     murka

murka 1.3.1b


Description of

murka


Murka (pronounced M-oo-rka, 'she-cat' in Russian) is a free program for inferring parsimonious phylogenies (i.e. trees of the minimal cost) from alignments of biological sequences. The theory behind this program is a combination of two algorithmic approaches: building median networks (which were introduced in early 80s in Algebra and later appeared to be very useful in Phylogenetics) and extracting Steiner trees from graphs. The advantage of this combination in one algorithm is almost complete coverage of the minimum cost trees from a source alignment and tolerate performance for many instances hardly to be totally solved by classical methods, particularly those working with topologies. In addition to exact algorithms, median-based heuristic methods are also available.Murka is a command-line application, it works fine both on Linux and Windows platforms. Currently two hardware architectures are supported: x86(ia-32) and ia-64 (Itanium2). We chose GNU Autotools to conduct the compilation and installation on POSIX platforms, while on MS Windows only a manual installation is available.Murka is provided with the source code for Linux and Windows, you may compile it for your hardware platform either 32- or 64-bit. The software has been tested on the following architectures:1. Linux x862. Linux ia64 (Itanium 2)3. Windows NT/2000/XP x86Binaries are available for all the mentioned platforms.


Published by: sourceforge.net
Downloads: 596
File Size: 1.6 MB
License: Freeware
Product Homepage: Visit sourceforge.net
Release Date: 24 November, 2012
OS: Windows
Download Location: Primary Download Link Broken? Report it!


murka 1.3.1b Download Tags:
Bio-Informatics    Mathematics    Open Source    Open Source Software    Development    Community    Source Code    Secure    Downloads    Free Software

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