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VARNA (Visualization Applet for RNA) 3.8


Description of

VARNA (Visualization Applet for RNA)


VARNA (Visualization Applet for RNA) is a Java lightweight component and applet for drawing the RNA secondary structure. Create RNA structures with this tool. It is also a Swing component that can be very easily included in an existing Java code working with RNA secondary structure to provide a fast and interactive visualization.Being free of fancy external library dependency and/or network access, the VARNA Applet can be used as a base for a standalone applet. It looks reasonably good and scales up or down nicely to adapt to the space available on a web page, thanks to the anti-aliasing drawing primitives of Swing.VARNA (Visualization Applet for RNA) Features:1. Automatically scaled, anti-aliased smooth rendering2. Support provided for input files in BPSEQ, CT, Vienna (DBN: dot bracket notation) or RNAML formats3. Export of snapshots in vector and bitmap picture formats: EPS, SVG, XFIG, JPG, or PNG.4. Fully-customizable, through a documented API for the component, or a set of documented "<param name="..." value="..." />"-type options for the Applet version5. Platform and browser independence (Only requires the installation of a version 1.5 of the Java plugin6. Support of non-canonical basepairs using the Leontis/Westhof nomenclature. Pseudoknotted structures are processed by first extracting a maximal planar subset of canonical base-pairs, draw the subset and use it as a scaffold for the rest of the base pairings.7. Provides real time user interaction and full display customization.8. Displays multiple secondary structures on a single Applet, saving precious computational ressources.9. Supports semi-automated annotation of individual structural parts, color maps and chemical-probing style of annotations.10. Open source, free-software distributed under the terms of the GNU GPL 3 license.Requirements:* Java


Published by: lri.fr
Downloads: 501
File Size: 753.5 KB
License: Freeware
Product Homepage: Visit lri.fr
Release Date: 08 December, 2012
OS: Windows
Download Location: Primary Download Link Broken? Report it!


VARNA (Visualization Applet for RNA) 3.8 Download Tags:


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